Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs34914899 chr16:1702103 T/C 4.68E-5 178 25.4 19.3 19.83 KM Plot
PCPG rs34916810 chr16:1764262 GT/G 7.13E-5 173 25.53 15.85 17.77 KM Plot
PCPG rs34926712 chr14:74512389 T/A 0.000221 175 25.4 27.43 10.43 KM Plot
PCPG rs34943350 chr3:53012888 C/T 6.21E-6 178 25.17 26.57 11.78 KM Plot
PCPG rs34950492 chr16:1764899 G/C 6.54E-5 174 25.6 15.85 17.77 KM Plot
PCPG rs34953016 chr2:242540511 T/C 2.99E-5 176 25.87 27.27 20.28 KM Plot
PCPG rs34959317 chr14:39616211 GTTTT/G 8.96E-5 172 25.4 20.37 22.1 KM Plot
PCPG rs34967203 chr10:131550790 CT/C 7.31E-6 176 24.85 28.35 14.25 KM Plot
PCPG rs34979715 chr3:53048960 G/A 6.09E-6 177 25.17 26.92 11.78 KM Plot
PCPG rs34983011 chr2:242583952 C/T 8.88E-11 172 25.77 25 10.3 KM Plot
PCPG rs34989058 chr2:239074698 C/T 8.01E-5 174 29.43 18.2 13.22 KM Plot
PCPG rs34993817 chr16:1691361 C/T 0 178 25.4 22.77 2.93 KM Plot
PCPG rs34996002 chr14:74450405 T/G 3.7E-6 176 25.28 28.47 10.3 KM Plot
PCPG rs35003429 chr2:24313954 TA/T 0.00011 178 25.28 26.92 17.43 KM Plot
PCPG rs35008320 chr3:39154864 C/T 8.94E-7 177 25.87 20.42 24.72 KM Plot